Amino
Acids - Proteins are made of combination
of amino acids and in the process of digestion each
protein is split up by the enzymes which act upon
it into the several amino-acids of which it is formed,
as it is only when in this state that protein can
be utilized by the tissues of the body. A great
number of amino acids are formed as the result of
protein digestion and these form a pool (the amino
acid pool) from which the cells of the body draw
the protein they need. Actually only 9 of these
amino-acids are essential for the growth and repair
of body tissues.
Examples : acetyl-l-carnitine
, agmatine sulphate , alanine (d,l,dl) , aspartame
,beta-alanine , creatine citrate , creatine monohydrate,creatine
phosphate disodium salt, creatine pyruvate, dirnethylglycine,
dl-allo-threonine, d-mannose, gaba , lycine, homo-l-cystein,
inosine, l-5-hydroxytryptophan, l-asparagine, l-aspartic
acid, l-carnitine (base, hci, tartrat, orotate),
l-carnosine, l-cystein (base, mono/anhydrous hci),l-cystine,
l-glutamine, l-hydroxyproline, l-isoleucine, l-leucine,
l-pyroglutamic acid, l-tyrosine, l-valine, n-acetyl-glycine,
n-acetyl-l-cysteine, phenylalanine (d,l,dl), proline
(d,l,dl), sarcosine, selenomethionine ,s-phenyl-l-cysteine,
threonine (d,l,dl), tyramine etc.
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Alanine
NE-MACA |
Very abundant,
very versatile. More stiff than glycine, but
small enough to pose only small steric limits
for the protein conformation. It behaves fairly
neutrally, can be located in both hydrophilic
regions on the protein outside and the hydrophobic
areas inside. |
Cysteine
NE |
The sulfur atom binds
readily to heavy metal ions. Under oxidizing
conditions, two cysteines can join together
by a disulfide bond to form the amino acid cystine.
When cystines are part of a protein, insulin
for example, this enforces tertiary structure
and makes the protein more resistant to unfolding
and denaturation; disulphide bridges are therefore
common in proteins that have to function in
harsh environments, digestive enzymes (e.g.,
pepsin and chymotrypsin), structural proteins
(e.g., keratin), and proteins too small to hold
their shape on their own (eg. insulin). |
Aspartate
NE-MACA |
Behaves similarly
to glutamic acid. Carries a hydrophilic acidic
group with strong negative charge. Usually is
located on the outer surface of the protein,
making it water-soluble. Binds to positively-charged
molecules and ions, often used in enzymes to
fix the metal ion. When located inside of the
protein, aspartate and glutamate are usually
paired with arginine and lysine. |
Glutamate
NE-MACA |
Behaves similar to
aspartic acid. Has longer, slightly more flexible
side chain. |
Phenylalanine
E-MACA |
Essential for humans.
Phenylalanine, tyrosine, and tryptophan contain
large rigid aromatic group on the side chain.
These are the biggest amino acids. Like isoleucine,
leucine and valine, these are hydrophobic and
tend to orient towards the interior of the folded
protein molecule. |
Glycine
NE-MACA |
Because of the two
hydrogen atoms at the a carbon, glycine is not
optically active. It is the smallest amino acid,
rotates easily, adds flexibility to the protein
chain. It is able to fit into the tightest spaces,
e.g., the triple helix of collagen. As too much
flexibility is usually not desired, as a structural
component it is less common than alanine. |
Histidine
E-MACA |
In even slightly
acidic conditions protonation of the nitrogen
occurs, changing the properties of histidine
and the polypeptide as a whole. It is used by
many proteins as a regulatory mechanism, changing
the conformation and behavior of the polypeptide
in acidic regions such as the late endosome
or lysosome, enforcing conformation change in
enzymes. However only a few histidines are needed
for this, so it is comparatively scarce. |
Isoleucine
E-MACA |
Essential for humans.
Isoleucine, leucine and valine have large aliphatic
hydrophobic side chains. Their molecules are
rigid, and their mutual hydrophobic interactions
are important for the correct folding of proteins,
as these chains tend to be located inside of
the protein molecule. |
Lysine
E-MACA |
Essential for humans.
Behaves similarly to arginine. Contains a long
flexible side-chain with a positively-charged
end. The flexibility of the chain makes lysine
and arginine suitable for binding to molecules
with many negative charges on their surfaces.
E.g., DNA-binding proteins have their active
regions rich with arginine and lysine. The strong
charge makes these two amino acids prone to
be located on the outer hydrophilic surfaces
of the proteins; when they are found inside,
they are usually paired with a corresponding
negatively-charged amino acid, e.g., aspartate
or glutamate. |
Leucine
E-MACA |
Essential for humans.
Behaves similar to isoleucine and valine. See
isoleucine. |
Methionine
E-MACA |
Essential for
humans. Always the first amino acid to be
incorporated into a protein; sometimes removed
after translation. Like cysteine, contains
sulfur, but with a methyl group instead of
hydrogen. This methyl group can be activated,
and is used in many reactions where a new
carbon atom is being added to another molecule.
|
Asparagine |
Similar to aspartic
acid. Asn contains an amide group where Asp
has a carboxyl.
|
Proline
NE-MACA |
Contains an unusual
ring to the N-end amine group, which forces
the CO-NH amide sequence into a fixed conformation.
Can disrupt protein folding structures like
a helix or ß sheet, forcing the desired
kink in the protein chain. Common in collagen,
where it often undergoes a posttranslational
modification to hydroxyproline. Uncommon elsewhere. |
Glutamine
E-MACA |
Similar to glutamic
acid. Gln contains an amide group where Glu
has a carboxyl. Used in proteins and as a storage
for ammonia. |
Arginine
E-MACA |
Functionally similar
to lysine. |
Serine
NE-MACA |
Serine and threonine
have a short group ended with a hydroxyl group.
Its hydrogen is easy to remove, so serine and
threonine often act as hydrogen donors in enzymes.
Both are very hydrophilic, therefore the outer
regions of soluble proteins tend to be rich
with them. |
Threonine
E-MACA |
Essential for humans. Behaves similarly to serine. |
Valine
E-MACA |
Essential for humans.
Behaves similarly to isoleucine and leucine.
See isoleucine. |
Tryptophan
E-MACA |
Essential for humans.
Behaves similarly to phenylalanine and tyrosine
(see phenylalanine). Precursor of serotonin. |
Tyrosine
NE-MACA |
Behaves similarly
to phenylalanine and tryptophan (see phenylalanine).
Precursor of melanin, epinephrine, and thyroid
hormones. |
Retrieved
from "http://en.wikipedia.org/wiki/List_of_standard_amino_acids" |
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